pietercoussement

install issues ubuntu 20.04 - base config not found - version 3.1.2

4

Hi, Installing on ubuntu 20.04 did not work as expected. Well, the install went forward without problems. However when wanting to run ete3 build I got the following error: ```...

Preproccessing of data

1

Hi, I might have missed it, but I fail to find some info on the preprocessing of data. Is there some documentation on that part? What columns are being used...

Batteries going really fast?

1

I get this:  Looking at this, i'll be happy to have a battery by the end of the week 😔. I'm polling every 30 min... Am i doing something...

i have code that works in terminal. however if i want to put it in a shiny, the plots doesn't show. ui.R file: ``` library(collapsibleTree) iibrary(shiny) ui

solver(s) question

8

Hi, As somebody that just wants to play a bit with FBA, I'm a bit choked on what to do solver wise. I'm now running an example using a genome...

Document expected schema for generic components

2

hi, some minor stuff I encountered running locally. Current code: ``` import pyarrow as pa pipeline = Pipeline( name="protein_pipeline", base_path="./data", ) dataset = pipeline.read( "load_from_parquet", arguments={ "dataset_uri": "/data/proteins.parquet", }, )...

Outdated documentation on custom components page

2

I have using a custom component, based on: https://fondant.ai/en/latest/components/components/#custom-components ``` dataset = dataset.apply( component_dir="components/biopython", arguments={ "sequences": "Sequence" } ) ``` But this errors: