Pablo Gonzalez

Hi @asl and @1dayac, I'm using SPAdes 3.11.1 which was available in the cluster. However, I get err -11. Several of my assemblies stopped at the counting kmer step reporting...

I used a conda environment to try to compile SPAdes because cmake is not installed in the cluster and cmake failed to compile ("The C++ compiler does not support C++11...

Another way of avoiding that error is by trying recreating an environment with the versions they used in their last release. This worked for me just now. `conda create -n...

Hello dear developer, I'm having the same error. I think that the function `setDT` is not defined in this repo at the moment. You must have it somewhere else. Could...

Hi Katarina, I had the same issue and didn't manage to overcome in apptainer/singularity nor in docker. In both cases it failed with `Please specify a valid reference path using...

Hi, This worked for me: `mkdir tmp; snpEff -Djava.io.tmpdir=tmp download -v EquCab3.0.105` Originally I had the following issue `while connecting to https://snpeff.blob.core.windows.net/databases/v5_1/snpEff_v5_1_EquCab3.0.105.zip FATAL ERROR: Failed to download database from [https://snpeff.blob.core.windows.net/databases/v5_2/snpEff_v5_2_EquCab3.0.105.zip,...