Patrick Cudahy
I'm getting odd broken pipe errors too. Is this issue still open or could it be something new?
Any updates on this issue?
Sorry to bring up an issue and then not follow up. With the COVID surge I've been doing all clinical work. I'll see if I can get some time to...
I'm running the notebook on my computer with the university cluster as the remote target. Running `!sos config` gives me the same output as my hosts.yml ``` 'yale_hpc_slurm': { 'address':...
I tried to make a smaller more reproducible example. My new notebook cell is ``` %run test_hpc2 -q yale_hpc_slurm [test_hpc2] import os import glob kraken_fastq_files = sorted(glob.glob('/data2/helen_mixed_infection/data/kraken2/*.kraken2')) remote_kraken_files = ["/home/pgc29/scratch60"...
That makes sense. I've also been avoiding the #scratch notation because it also takes tens of minutes to transfer a few files over a gigabit lan connection. Instead I've been...
I get the same error when trying to use geom_pointrange and coord_flip using ``` version R version 3.4.4 (2018-03-15) os Ubuntu 18.04.2 LTS ... ggforce * 0.2.2.9000 2019-07-02 [1] Github...
I also have a diverse dataset with multiple read lengths. I'm thinking of setting to the minimum, but would appreciate any guidance.
Hi, I'm experiencing this error but the mentioned dev release is no longer available. Could you please point me to a new one?
Hi, this seems to be still broken. Has any progress been made? In my console I get several errors like `Failed to validate dynamic code signature of accessing process identifier=,...