Personalis, Inc.
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2
issues of
Personalis, Inc.
When trying to run STAR-SEQR, I get this error after STAR has finished alignment: `OSError: [Errno 2] No such file or directory: '/path/to/SAMPLE.Chimeric.out.junction'` The reported STAR command line specifies "--chimOutType...
When the VCF Reader parses our VCF's header, there is a particular line that gets truncated. The line is added by GATK (sorry, the line is very long): `##GATKCommandLine.VariantFiltration=` Specifically,...