Eric Perlman

Support for large requests (more_body=True)

5

This library seemed to hit the spot for drop-in support for msgpack with FastAPI. I am using the following to enable the msgpack interface: `app.add_middleware(MessagePackMiddleware)` Unfortunately, large client requests are...

Fix for display of label colors

1

# Description As described in https://github.com/napari/napari/issues/4384, using a label layer with a color dictionary behaves poorly when the number of colors exceeds ~400. This PR makes two important, and one...

[WIP] Use a shader for low discrepancy label conversion

11

# Description The pull request will move the current label color calculation onto the GPU. The current version of the code is from a few hours of pair session with...

Support more than 1024 user-defined colors on label layers

2

## 🧰 Task _I'm adding this issue as a placeholder for known technical debt._ The current implementation of mapping user-defined colors to labels is limited to ~1024 unique colors. This...

compress='' and compress=None behave differently

4

I was attempting to assemble a local dataset for neuroglancer, and was surprised to find cloud-volume compressing by default. Digging in, it looks like `vol = CloudVolume(..., compress='', ...)` and...

Retrieve a list of scale with the neuroglancer_precomputed driver?

1

Is there an easy way to list the scales available from a neuroglancer precomputed source? I suspect I'm missing something obvious. My current work around is to iterate `scale_index` from...

Support using only a subset of modules

10

Thanks for this great library for interfacing with CATMAID. It would be great if I could include a single module (e.g. pymaid.fetch) without the other modules. This is currently not...

NML export

1

Support export of the [NML format](https://docs.webknossos.org/webknossos/data_formats.html) used in WebKnossos. This is work in progress. This is just a very rough prototype to output a single neuron. - [x] Basic NML...

This has been floating around in my local branch for a while. It seems worth pushing. This exposes a small CATMAID API to get the nearest node in space, or...

Access to large images (>2GB)

1

The napari-omero plugin fails to load large images from OMERO. This is not too surprising given the use of PixelService to read image data. This image size is 230144x96256x3. I...