Pedro F. Ferreira

Thank you very much the great answer! Yes, I meant the post hoc correlation. In particular, I am experimenting with the SA501 data from your paper and when I set...

For filtering, I am going through the steps outlined in `run_clonealign.Rmd` from your `clonealign-pipeline` repository, so keeping the top 50% variable genes in expression which also vary in CNV across...

Thank you for this nice reference. I will try to reproduce it next week when I am back. The fact that in my runs the best ELBO was achieved at...

@anilbey would you like to do this? Using Sphinx we could also provide the notebook examples in the docs, which would keep them updated with every code version (#102).

I was having the same issue, so I just changed `lsf_submit.py` to not set the `-M` option in this line: https://github.com/Snakemake-Profiles/lsf/blob/34c3c4c462d3a2070643a00033815f30bfd105e0/%7B%7Bcookiecutter.profile_name%7D%7D/lsf_submit.py#L90 I'm not sure what's the point of having that...

Sorry for re-surfacing this, but I'm still having trouble with the `graph-tool` compatibilities. Could you please provide a working environment for OS X? Thanks!