Peter C Kroon

Hi, I have a project on github called PySmiles (https://github.com/pckroon/pysmiles/), and since our packages are named very similar I thought it would be decent to mention your package in my...

py:class networkx.algorithms.isomorphism.GraphMatcher not documented

1

Hi all, I have a documentation issue. I'm using networkx for a project, and making subclasses of `networkx.isomorphism.GraphMatcher` and in general linking to the networkx documentation. I find two issues...

Hi all, thanks for the clear and concise write-up. I suggest adding/mentioning hypothesis [1] in the advanced unittesting section. Hypothesis is a library designed to generate arbitrary non-random input for...

Models don't have a __repr__ method

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Models currently don't have a repr method, which makes debugging needlessly difficult in some cases. See e.g. https://travis-ci.org/github/tBuLi/symfit/jobs/702160446#L329

Verbose fit

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Here's an initial mock-up of a `FitStatus` object that can be used to track convergence. I still need to add tests (and make sure the docs build). @JohnGoertz would this...

This makes ODEModel a subclass of CallableNumericalModel, which magically enables using constraints with ODEModels. In addition, to preserve existing behaviour, the finite_difference method is moved to CallableModel (everything we can...

Confidence bands and intervals are valuable tools in evaluating how good a model fits data. Here's some reading for the technical/mathematical implementation. In addition, we need to think about the...

Create first hypothesis test

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This is the first step into pulling the tests into 2019 by 1) introducing pytest, and more importantly 2) setting up Hypothesis style testing. The first test generates 500 random...

Cannot provide data for interdependent variables

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I'm working on creating some sadistic testcases for symfit, and I came across the following. Obviously this is a toy example, but that's besides the point. ```python3 Y1, Y2, x...