Paul Billing-Ross

Support for Google Cloud Storage?

2

I was made aware that you can run Samplot-ML on Google Cloud Platform (https://docs.google.com/document/d/1EfrNv6Y5aGDbQ3Je5jBI83owdOveVbmqIP6fuCDmEEw), but from the `workflows/conf/samplot-ml-predict.yaml` config file it looks like only local and S3 storage are supported....

Identity By State variant streamer fails with write error

1

I am trying to apply the IdentityByState pipeline to my variant data, but it reliably (n=4) fails with a write error. Error message: ``` (dd6b6f2b6ea510df): Workflow failed. Causes: (dd6b6f2b6ea5110a): S07:VariantStreamer/ParDo(RetrieveVariants)+VariantStreamer/ParDo(ConvergeVariantsList)+JoinNonVariantSegmentsWithVariants.BinShuffleAndCombineTransform/ParDo(BinVariants)+JoinNonVariantSegmentsWithVariants.BinShuffleAndCombineTransform/GroupByKey/Reify+JoinNonVariantSegmentsWithVariants.BinShuffleAndCombineTransform/GroupByKey/Write...

Option "--keep-alive" not available in v0.3.8

4

It looks like the `--keep-alive` was removed in v0.3.8. I find this useful for debugging; is there another way to enable this option, or will it be returning in future...