Peter Belmann

Results 13 issues of Peter Belmann

Dear nextflow developers As stated in issue (https://github.com/nextflow-io/nextflow/issues/2564) opened by @cnexcale, we are interested in using nextflow in combination with the nextflow feature that allows us to use OpenStack S3...

platform/ignite
storage/aws-s3

Hi, thank you for providing this plugin! In my case the graph is placed in a tab (using superfences). If I initially load the page and click on the tab...

mkdocs-material
mermaid-js

Hi, thank you for developing this tool! I would like to use medaka for polishing a dataset where I only have information about the device. Would it still make sense...

enhancement

Hi, im using the biocontainer `quay.io/biocontainers/platon` version `1.6--pyhdfd78af_1`. Specifying `--meta` seems to be not part of the of the parameter settings even though it is mentioned in the README. ```...

help wanted

We agreed on extending the initial tests we have so far in this repository.

We should maintain a CHANGELOG.md that always shows the changes made on the code. A user can by reading this file always understand which bugs are solved and which features...

Hi, am using `mmseqs search` and I want to estimate the peak RAM consumption for my uniref90 database. I found a formula for the prefiltering step in your [wiki](https://github.com/soedinglab/mmseqs2/wiki#memory-consumption) and...

I would like to assign a taxonomic label to my protein sequences using the blast NR database and the mmseqs taxonomy command available in the docker image (quay.io/microbiome-informatics/mmseqs:2.13). I noticed...

Even though a memote docker image is tagged with version 0.13.0, it still contains a memote version 0.12.0: ``` docker run -it --entrypoint="/bin/bash" opencobra/memote:0.13.0 memote@ca4dfe75197d:~$ memote --version memote, version 0.12.0...

Thank you for developing smetana! I just have a general question. I'm currently building models with carveme by using the default command (`carve genome.faa`) without specifying any media via `--gapfill`....