Pavel Tomanek

@boegelbot please test @ generoso

@boegelbot please test @ jsc-zen3

Hello there, I am hitting the same error when try to build PhyML --enable-phytime. The patch from [ntakebay](https://github.com/ntakebay) works, thank you!

Hi! I juts start to work on https://github.com/vscentrum/vsc-software-stack/issues/283 pipeline of RFdiffusion - ProteinMPNN -AlphaFold. I'd like to use RFd with data models either. Do you working on that or you...

For now the `vigra` and `nifty` seems fine. I was able to build them. But there is a problem with `z5py`, could you hint me please? I am hitting error...

Yes it works! I update versions of `xtensor` and `xtensor-python` and it seems `nifty` has no problem with more recent xtensor versions :) Thank you!

@constantinpape thank you for your help! It seems micro-sam can be installed by EasyBuild and is ready to be tested by researchers now. - https://github.com/easybuilders/easybuild-easyconfigs/pull/20636

For me helped: ``` sed -i -e 's/from fasta/from pyfasta.fasta/' -e 's/from records/from pyfasta.records/' -e 's/from split_fasta/from pyfasta.split_fasta/' pyfasta/__init__.py && sed -i 's/from collections/from collections.abc/' pyfasta/fasta.py && sed -i 's/from...

Hello, I am facing the same error after installation. Could you tell me how you solved this problem with `cassiopeia.preprocess.collapse_cython` please?

Hello @mattjones315, I am working for UGent [HPC](https://www.ugent.be/hpc/en/contact) and we are using [Easybuild](https://github.com/easybuilders) for installing the scientific software. I have GCC 12.3.0 and Cython 0.29.35. For an installation I am...