Paul Reiners

03_01_autoencoder_train.ipynb: FileNotFoundError: [Errno 2] No such file or directory: 'run/vae/0001_digits'

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Hi, Thanks for the great book. I am trying to run _03_01_autoencoder_train.ipynb_ on Google Colaboratory. However, I am getting this error: ``` FileNotFoundError Traceback (most recent call last) in ()...

What sort of thing should [`placeholder`](https://github.com/denti/AlexNet3D/blob/5c84a2785ace5b8c3ae1af6369b99564bda9a9ad/AlexNet_3dConv.py#L30) be? Could you give an example?

What is the definition of [`train_writer`](https://github.com/denti/AlexNet3D/blob/5c84a2785ace5b8c3ae1af6369b99564bda9a9ad/AlexNet_3dConv.py#L160)?

[ENH] The class FirstLevelModel should directly support the usage of Cifti files as input (dtseries)

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### Is there an existing issue for this? - [X] I have searched the existing issues ### Describe your proposed enhancement in detail. If you look at nilearn's `FirstLevelModel`, the...

[BUG] Bug in "Example of surface-based first-level analysis"

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### Is there an existing issue for this? - [X] I have searched the existing issues ### Operating system - [X] Linux - [ ] Mac - [ ] Windows...

Does anyone know what might be causing this error: ``` python-BaseException Traceback (most recent call last): File "/panfs/jay/groups/4/miran045/reine097/projects/loes-scoring-2/.venv/lib64/python3.11/site-packages/fastai/data/load.py", line 172, in one_batch with self.fake_l.no_multiproc(): res = first(self) ^^^^^^^^^^^ File "/panfs/jay/groups/4/miran045/reine097/projects/loes-scoring-2/.venv/lib64/python3.11/site-packages/fastcore/basics.py",...

TypeError from ext.transform (numpy > 1.24.4)

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I am running [this example](https://naturalistic-data.org/content/Pliers_Tutorial.html#example-1-audio-rms). Here is the code: ``` import warnings warnings.filterwarnings("ignore", message="numpy.dtype size changed") warnings.filterwarnings("ignore", message="numpy.ufunc size changed") from pliers.extractors import RMSExtractor import os.path # Create an instance...

I am using **version 1** of nnU-Net. I am trying to follow the directions given here: - https://github.com/MIC-DKFZ/nnUNet/blob/master/documentation/pretraining_and_finetuning.md#training-on-the-pretraining-dataset Here is what I'm running: ``` FINETUNING_DATASET=540 nnUNet_plan_and_preprocess -d ${FINETUNING_DATASET} ``` Here...