William Patton

tqdm is widely used in the machine learning community. It seems natural that we should be able to watch a model train while we watch our models train. This pull...

Note current tensorflow version 1.8.1 doesn't support python3.7. Need to upgrade tensorflow to at least 1.13

I haven't done any tests to determine whether the coordinate channel is useful, but if you want it here is an implementation.

also make a tutorial with graphs

Channel wise intensity

2

Pre-Merge Checklist: - [X] if this PR adds a feature: request merge into the latest development branch (`vX.Y-dev`) - [X] if this PR fixes a bug: request merge into the...

We should either pin to version 2 or update to version 3 See migration guide here: https://zarr.readthedocs.io/en/stable/user-guide/v3_migration.html#v3-migration-guide Updating to version 3 drops n5 support. Recommended alternative is: https://github.com/zarr-developers/n5py. Does not...

Difficulty accessing torch module from a zipped model

2

I want to have direct access to the `torch.nn.Module` of a model from the model zoo (if available), but having difficulty accessing it. *Approach 1* 1) `pip install bioimageio.core>=0.7` 2)...

Invalid model description from rdf on model zoo

2

I am trying to load a model from the model zoo. Steps: *Approach 1* 1) `pip install bioimageio.core>=0.7` 1) I went to download [this](https://bioimage.io/#/?id=10.5281%2Fzenodo.5764892) model 2) I downloaded the rdf...

**Is your feature request related to a problem? Please describe.** We want fast distance transforms calculated on arrays with multiple labels. This is non trivial, and very slow if not...