Delbert
Delbert
Hi @nextgenusfs. Thanks for taking a look at this. Here are the log files. Doesn't seem to have any errors though. I've noticed that the training process stops during minimap2....
Hi @nextgenusfs Jon. I've added the flag -I \G to minimap2, and it seems it's working without errors at least at the minimap2 step. Could it be that if the...
Hi Jon, thanks for the suggestions! How would minimap2 being the only aligner specified affect the result assuming it worked without errors? I don't see any unusual with the the...
Hi @jimie0311. I was wondering if by any chance you happen to address this issue? I'm also getting this issue with PASA. Thank you very much.
> FYI, this can currently be done from Python with cooler using a 2D array-like object (e.g. a numpy array, but also a memapped numpy array or dense HDF5 dataset...
Found out that ArrayLoader is actually under cooler.create.
hi @Eeonum by any chance I'd like to ask whether you were able to address this issue on your end. I'm trying to run a similar one, but I keep...
Hi @AMFBio . I'm wondering if by any chance did you find a way to add a scale bar using phyloseq?
Better late than never. Sharing what I found and eventually used to generate a scale bar. The library ggtree does the job, although importing the library may generate unusual warnings...
Hi @slvrshot. I'm wondering if by any chance did you find any means of doing this one?