panganqi

MSA tensor format

5

In the Usage, there is code like `seq = torch.randint(0, 21, (1, 128)).cuda()` `msa = torch.randint(0, 21, (1, 5, 64)).cuda()`. If I have a a3m msa file, how to encode...

About version of zero_to_fp32.py

1

Hi, I'm training openfold with single node multi GPUs and multi nodes multi GPUs. I find something interesting. In the `environment.yml` file the deepspeed version is `deepspeed==0.5.3`. But the zero_to_fp32.py...

"buffer overflow detected" when using psipred.

21

here is the error: `./input_prep/make_ss.sh: line 18: 11775 Aborted (core dumped) psipred $ID.mtx $DATADIR/weights.dat $DATADIR/weights.dat2 $DATADIR/weights.dat3 > $ID.ss` I am running the fasta file in example/input.fa, I think this might...

The step2 scoring looks correct but the step3 model is talking gibberish

10

For the step2 scoring: `python3 training/step2_reward_model_finetuning/rw_eval.py --model_name_or_path output/reward-models/350m/ ==================Eval result============================ prompt: Human: Please tell me about Microsoft in a few sentence? Assistant: good_ans: Microsoft is a software company that develops,...