pakiessling
pakiessling
@ccbvib give this a shot https://github.com/kharchenkolab/Baysor/issues/82#issuecomment-1593566888
Hi, did any one ever end up testing Densmap for scRNA ?
Might be related to this https://github.com/pytorch/pytorch/issues/51112
Issue is fixed by changing enviroment to: name: tangram-env dependencies: - python==3.8.5 - pip==20.2.2 - pytorch==1.4.0 - scipy==1.5.2 - matplotlib-base==3.3.1 - seaborn==0.11.1 - jupyterlab==2.2.6 - nb_conda==2.2.1 - pip: - numpy==1.22...
@j-mitchel Thank you, this is exactly what I wanted to know. Is there a recommendation on the minimum number of cells my cell types should contain?
Thank you so much. It is not urgent at all. I am just interested in comparing cellpose vs cellpose + baysor vs cellpose + pciseq performance. I will just subscribe...
Thanks, I appreciate it
I am excited to give it a shot. I am working on a Linux HPC. Let's see if I can get redis to run without root, otherwise I will setup...
I actually have a question about that. The pipeline I am currently using segments my 7 image stacks separately as 2D and then fuses polygons across Z-Axis. Vizgen recommends that,...
Ok, I probably misunderstood something. I guess the important part is, I need to supply a list matrices with length of my z-axis. Coordinates without Cell should have value 0,...