Pablo Angulo Lara

Use of smoove in haploid organisms

2

Hello, I would like to use this tool in an haploid organism. It would be possible? If so, what parameters should I modify? Thanks Pablo

How to join the output for a whole genome analysis

5

Hello, I am using SNPGenie for a Genome-wide SNPs dataset of 70 individuals of a haploid organism consisting of 14 chromosomes, using as input a VCFfile. For the requirements of...

Hello, I would like to use this tool with whole genome sequencing, germline data and haploid organisms. What parameters would be more suitable? Regarding the segmentation method, would be better...

Use of lumpy in haploid organisms

3

Hello, I would like to use this tool in an haploid organism. It would be possible? If so, what parameters should I modify? Thanks Pablo

Use with Nanopore long reads

1

Hello, Would be possible to perform a SNP variant calling using Nanopore sequencing data? What parameters would have to be modified and how could a custom error model based on...

Hello, Thanks for the tool. Would be possible to use it with ONT Long-reads? Thank you very much, Pablo

Hello, Thanks for the tool. I would like to ask if it's possible to use it with long-reads (ONT) and if so, which parameters should be adjusted in parascopy depth...