orian116
orian116
Hi @SeppeDeWinter Here is the head and tail of my genome annotation file. It does have the 'Gene' column:
@SeppeDeWinter I have narrowed down the error a bit. It seems like in the gene_search_space.py function, the column names are present before running pr_gene_annotation = pr.PyRanges(gene_annotation.query("Gene in @scplus_genes").copy()) but not...
Thank you! That seemed to work but now I am getting a new error
Thank you so much! I was able to get to the eRegulon dataframes