openproblems-v2

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Add novel method to predict modality task

2

## Describe your changes ## Issue ticket number and link Closes #xxxx (Replace xxxx with the GitHub issue number) ## Checklist before requesting a review - [x] I have performed...

KaiWaldrant

## Describe your changes ## Issue ticket number and link Closes #xxxx (Replace xxxx with the GitHub issue number) ## Checklist before requesting a review - [ ] I have...

KaiWaldrant

## Describe your changes ## Issue ticket number and link Closes #xxxx (Replace xxxx with the GitHub issue number) ## Checklist before requesting a review - [x] I have performed...

rcannood

### Task motivation Spatially resolved transcriptomics offers unprecedented insight by enabling the profiling of gene expression within the intact spatial context of cells, effectively adding a new and essential dimension...

lzj1769

Right now, the `trace.txt` uses the `tag` which is simply set to `$id` to figure out which process is linked to which component. However, the structure of the id is...

rcannood

[predict_modality] add Simple MLP from Neurips 2021

1

## Describe your changes ## Issue ticket number and link Closes #xxxx (Replace xxxx with the GitHub issue number) ## Checklist before requesting a review - [ ] I have...

KaiWaldrant

C2c source target v1 to v2

1

## Created the api for the C2C source target task for v2 ## Issue ticket number and link Closes #xxxx (Replace xxxx with the GitHub issue number) ## Checklist before...

vishnu-vasan

[batch_int] Revamp control methods

3

The OpenProblems v1 repo has the following control methods: * No integration (Simply return PCA embedding) * Random integration: - Permute features - Permute graph - Permute PCA embedding *...

rcannood

rcannood

The DR task seems to not have sufficiently good positive controls * Positive control for LCMC at k=30 * Positive control for QNX at k=30 * Positive control for QNX...

rcannood