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Add spatially variable genes task

Open lzj1769 opened this issue 1 year ago • 0 comments

Task motivation

Spatially resolved transcriptomics offers unprecedented insight by enabling the profiling of gene expression within the intact spatial context of cells, effectively adding a new and essential dimension to data interpretation. To efficiently detect spatial structure of interest, an essential step in analyzing such data involves identifying spatially variable genes. Despite researchers having developed several computational methods to accomplish this task, the lack of a comprehensive benchmark evaluating their performance remains a considerable gap in the field

Task description

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Proposed ground-truth in datasets

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Initial set of methods to implement

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Proposed control methods

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Proposed Metrics

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lzj1769 avatar Mar 12 '24 05:03 lzj1769