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s-ach
I think first you should try validating if the file is not corrupt. Try opening the file which couldnot be opened by the nnUNet reader. If in case there the...
As in my case it gave the suggestion to visit this website: https://docs.monai.io/en/latest/installation.html#installing-the-recommended-dependencies As the error was due to monai not installing necessary libraries like ITK,etc... to load the images......