Omer Faruk Cetiner

Hello again, Interesingly, When I deleted the S3735D7-S12 directory and decreased the threads the script run but end of the pipeline it gave that. (by the way, when I run...

I never set the threads to 99. The first time, I had replaced it with 18 and again I set it to 15, and it worked. `logs/QC/report.log` is empty. Although...

Actually, when I get the read_stats error, I advance the same command. Finally, All read_stats were finished but the build_qc_report gives the error above. I proceed to assembly and encountered...

Hello @SilasK and @jmtsuji, Firstly, I had the pipeline run with the same number of `simple job threads`, `threads `, and `--jobs` My pipeline had been interrupted many times due...

Hello again, I'm sorry for the late reply because I had to consult my professor about the quality of the samples. My samples are paired-end. And actually, I have never...

**> I should find a way to improve this. As the qc report should precisely allow you to see that some samples are of bad quality.** Before analyzing the samples,...

Hello, I had encountered the same problem. While I was trying this solution I was removed from the terminal. > So the problem is that you cannot download the database...

@SilasK yes exactly.

I think the problem is that you should have used kraken's **report**. `exa.txt` is **output** of kraken. Please check it: https://github.com/DerrickWood/kraken2/wiki/Manual#sample-report-output-format

Hi, I had a similar problem with you. The databases were on 2017 in terms of me (`abricate --list`). I also checked _miniconda/bin/abricate and abricate-get_db_ files' date and It belonged...