Omega Alpha
Omega Alpha
Sorry for the delay. It seems like something wrong with your input data? I am not sure. It would be better if you could offer me the data (or part...
Hello, mohikush, thank you for your advise.
Thank you for point out the issue. Since the analyzing codes are abundant for the core codes for the model. I only extracted the core codes to be this stand-alone...
Hello, amssljc, All 'max value' actually are 99-percentiles, not the truly the max value in matrices. the max value of original matrix could be more than 10^5 (especially for values...
Sorry for delayed reply, The Hi-C data were downloaded from GSE63525, and only .tar.gz files were available when we downloaded these data. I checked the raw data from GSE63525 (e.g....
Yes, I agree with you. According to the description in the README file (GSE63525_GM12878_primary_README.rtf) > To normalize this entry using the KR normalization vector, one would divide 59.0 by the...
As I can see, these errors are caused by the network connection. In this repository, only one step, loading the VGG16 model from torchvision, would try connecting the internet and...
1. I have made some analyses for determining downsampling factor for users' data. like Note S2, Fig S17. Hope these results helps you. 2. DeepHiC only focuses on intra-chromosomal data,...
I use .npz file because it can be easily loaded in python (with numpy) without any conversion, and these compressed files save a lot of storage. And I use matplotlib...