olivermccallion

polygon_query() throws AttributeError: 'NoneType' object has no attribute 'intersects' error

7

Hi, I'm trying to perform a polygon_query() on a Xenium object: ``` SpatialData object with: ├── Images │ ├── 'he_image': MultiscaleSpatialImage[cyx] (3, 33558, 57706), (3, 16779, 28853), (3, 8389, 14426),...

Shape layer geometry changes when saving object to SpatialData object

2

Hi, Thanks for the fantastic work. I'm running into a problem with saving annotated shapes to my SpatialData object that I was hoping you would be able to help with....

ir.pp.ir_dist() performance on interactive versus batch jobs

1

**Describe the bug** I'm trying to calculate the IR distance for 100k TCR sequences: ``` ir.pp.ir_dist( sample, metric = "alignment", sequence = "aa", cutoff = 15) ``` If I run...