Ole Kristian Tørresen
Ole Kristian Tørresen
Hi Jon, I think you mentioned MetaEuk (https://github.com/soedinglab/metaeuk) to me at some point (as a comment in a failed research application). I've experimented a bit with it after that, and...
Hi, now that hifiasm 'generates a pair of haplotype-resolved assemblies', what is the best way of scaffolding these? This has been on my mind a bit lately, and this might...
Hi, I'm trying to run FindTranslocations, but I get this error/warning: "BAM file has no @HD SO: attribute: it is not possible to determine the sort order" However, samtools sort...
**Describe the bug** When specifying -g mitochrondrion, it looks like the relevant line is not correct. It looks like this: `XXOG mitochondrion` Similar when specifying plastid: `XXOG plastid` I think...
Hi, I was trying to filter a vcf created with the 4.0 beta version, when the filtering script crashed with this error: Traceback (most recent call last): File "/projects/cees/bin/lobstr/lobSTR-bin-Linux-x86_64-4.0.0/share/lobSTR/scripts/lobSTR_filter_vcf.py", line...
Hi, I am trying to get compleasm running, but run into an issue. Specifically, I get this error: ``` Traceback (most recent call last): File "/cluster/projects/nn8013k/programs/miniconda3/envs/compleasm/lib/python3.7/urllib/request.py", line 1350, in do_open...
Hi, we have a lot of samples from "mountain birch forest" in Norway which we want to upload to ENA. However, I cannot figure out a good ENVO term for...
Hi, we have several species which is troublesome to sequence (PacBio really don't like STRs). For these we have generated ample (hopefully ample, about 80x HiFi and 50x ONT) sequencing...