Olivier Delaneau
Olivier Delaneau
Hi, Can you also send the command line you run, please? For both phase_common and phase_rare? Best, Olivier Delaneau Le mar. 4 avr. 2023 à 15:11, Tanguy Lallemand ***@***.***> a...
Sorry, I come back to this quite late. Is this problem still happening even with last version. Two comments anyway: 1. Try increasing your chunk sizes for phase_Rare. 2. Check...
Hi Bob, I'd be very interested in digging this further. Any chance you can share with me some dataset I can use to debug? You can email me directly (check...
Thanks for all the comments and testing. I'll look at the example dataset of [schnabelr](https://github.com/schnabelr) and let you know guys as soon as I understand the problem.
One possible explanation for this problem is the lack of QC on the sequencing data prior to phasing. Before running phase_common and phase_rare, I strongly recommend: - excluding variants and...
That's a good plan. I'll add soon a new tool that checks a few things on the data prior to phasing.
Okay, I would like to investigate this one a bit further. Can you email me and share some data with me? SO that I can reproduce this error? My email...
Hi, Could you please send me the output of: *bcftools view -G -H -r 7:36000001-41000000 chr7_berk_60K.vcf.gz* Thanks, Olivier Delaneau Le ven. 7 avr. 2023 à 15:07, JP_Breed ***@***.***> a écrit...
Hi, Can you check if you still have the problem with the v5.1.1 pre-release? Thanks,
Can you please share with me a small example dataset reproducing the error?