ntromas
ntromas
Hi again, so I just tried (0.95) and analyze the output with checkV. I still have around ~30% with "no viral genes detected". --
Hi, It seems that I don't get that error anymore. However, Step 1 is still processing (Started the run the 23). Here is the details of the input file: #...
Hi, Ok it worked perfectly now. I have another naive question, is VirSorter2 searching for prophage too? It is not super clear for me from the output. Cheers,
Thanks! I would have a last question, to avoid confusion, how the max score is calculated. Cause I can get max score=1 and viral%
Hi Matt, Sorry if I was confused. Coverage of all positions would work too (covT right?). What I meant initially is that inStrain won't report if there is no variation...
Hi Matt, What would be the best way to extract this information? Should I just use coverT.hdf5 (any advice to play with this kind of file?) Cheers, Nico Le mar....
Hi Matt, Great! Thanks for the help! Cheers, Nico Le mer. 1 nov. 2023 12 h 10, Matt Olm ***@***.***> a écrit : > Hi Nico, > > To load...
Hi Daniel, Thanks for the help. Yes I saw the different issue but I was just wondering if there is a way to reduce variations in outputs. I got my...
Hi Daniel, Thanks a lot for the advices!! Cheers, Nico Le jeu. 29 avr. 2021 02 h 55, Daniel Machado ***@***.***> a écrit : > Hi Nico, > > Yes,...
Ok thanks!