Nathan Sheffield

Results 337 comments of Nathan Sheffield

I have a use case where I want per-section bibliographies, split references into 1) those cited in the main text; and 2) those cited in supplemental text. The complete document...

> > @nsheff You mean such as [this one](https://github.com/pandoc/lua-filters/tree/master/section-refs)? Close, but that filter forces a bibliography at the end of every section, so it didn't work for my purpose. But...

This is not an error in LOLA, it's an issue with the data you are using. In other words, the question you are asking of LOLA doesn't really make sense....

Hi, thanks for the interest. Try this: https://github.com/nsheff/LOLA/blob/8262ff58d54ec4e335f71f6d4ce1d3a796a5bfce/R/LOLA.R#L163-L178 then just proceed as normal with that restricted universe as the universe you provide to LOLA.

I'm not sure why that would happen...you're suggesting throw away all names all the time? This appears to be only setting names if they aren't set. it would be helpful...

@joseverdezoto this is not passing the travis unit tests, can you look into that?

> I think the previous travis unit tests warnings arose because I didn't have simplecache installed locally this was running on travis, right? your local environment would be irrelevant...

You could try it... If there are lots of cpgs it might be slow. You could instead try to group them into regions, that would probably be faster and more...

Are you by chance using windows? It doesn't have wc and so that causes problems. I fixed this in [this commit](https://github.com/nsheff/LOLA/commit/9725117a6414402fb9007ca3e3d18233f14815f9) but maybe I forgot to push this to bioc...