Nicolas Servant

Hi @nvictus Unfortunatly, the first solution did not work. I still have the same errors. Thanks for the tips about `cooler pairs` instead of `pairix`. So finally, is there any...

ok. I'll try and let you know if it works. What would be the best way to go for this type of data according to you ? Should I add...

Hi @Phlya, I agree with you. The only point is that I frequently have some balancing issues using the contacts that are only captured on one end ... while focusing...

One interesting feature which could help on that would simply be to have a tool which could extract a sub-matrix from a cooler object. Then you could imagine to generate...

Hi, An update of this topic. @nvictus, I tried to add the first/last bins. It is now working with `csort` + `cload pairix`. However, it's still crashing with `cload pairs`...

Dear all, I have the same issue. None of the conda version works on my Linux Centos. Is there any library to add in the conda recipe to fix the...

We fix it by adding the tbb package (I also added the libgcc but I think it is not mandatory) : ``` name: salmon channels: - bioconda - conda-forge -...

Hi guys On more comment on that. I developed a R package for BioC a couple of years ago (HiTC). Objects from HiTC classes are still commonly used to store...

Sorry, so actually there is another point which is not clear to me. @pkerpedjiev "To convert data to cooler, there's the cooler package, which provides a convenient command-line interface for...

Thank you very much for your fast answer ! Adding a piece of context here ; I'm developing HiC-Pro which is a pipeline for Hi-C data processing, and several users...