nsauerwald

Was there ever a resolution to this? I'm also trying to run HiCPro on some pre-aligned data and having a lot of trouble. It would save me a lot of...

Thanks! My files are bowtie aligned (they're actually just subsampled from a previous alignment run through HiC-Pro), but I'm not sure exactly which files HiC-Pro needs for the next steps....

Perfect, thanks! I was doing exactly what you said, but used the bwt2pairs.bam files, so that must be why it wasn't working.

I am also getting this error and can't figure out the problem. I've tried filtering out samples with high levels of missing genotypes, looked for any formatting issues, and ensured...

I was using the static binary ("phase_common_static") on some data I have saved locally when I encountered this error, so it is definitely not specific to the docker container. In...