nroak comments

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                                            nroak

Error in nnls(D.weight, Y.weight) :

I have the same issue in this step. Can you please let me know what's causing it?

creating expression sets from bulk and single cell RNA seq

I have the same issue. I can't use the methods described above to convert my Seurat object to the ExpressionSet object. It's unclear what the pheno.matrix and metadata matrices should...

ENH: add support for annovar annotations

Looks like Annovar terms are mentioned in the [synonyms section](http://www.sequenceontology.org/browser/current_svn/term/SO:0001819) of sequence ontology per their website. In annovar annotated VCF, these terms are under ExonicFunc.refGene tag and gene names are...

ENH: add support for annovar annotations

That's what I originally believed, but since bcftools failed, had to put this request in. bcftools originally threw an error regarding chr, but I now have correct gff3 file. It...

ENH: add support for annovar annotations

I agree, just not able to figure out what's odd. Haven't encountered this before.

Can't implicitly convert non-string objects to strings

I have the same error as @Avaptel18 Has any solution been release so far?

Nullable string columns

Thank you for this update, is there an estimated timeline for this issue to be patched? I'm facing it exactly where you explained- due to nan in ranked gene lists.

Running into ld error while installing NNLM

I was facing the same issue, installing RcppArmadillo package solved the isssue for me. I also updated ~/.R/Makevars file to include my gcc path `FLIBS=-L/usr/local/Cellar/gcc/13.2.0/lib/gcc/13.2.0`

Music2 bug in "music2_prop_t_statistics" function

Here to report the same issue.