npsonis

Hi, I have been using an older version. I updated recently and I noticed that the aforementioned tables are missing. Can you confirm that this is by design and not...

iterations issue

4

Hi I am using mia to estimate contamination levels. It works for all of my samples but one, for which I get this error: Making kmer list for k-mer filtering......

Error in rule Plot_Authentication_Score when using FULL NCBI database

20

Hi, I got the following error Error in rule Plot_Authentication_Score: jobid: 15 input: results/AUTHENTICATION/.30012ssL12c.collapsed_done output: results/overview_heatmap_scores.pdf log: logs/PLOT_AUTHENTICATION_SCORE/plot_authentication_score.log (check log file(s) for error details) conda-env: /aMeta/.snakemake/conda/55e1a8bf92c9925034725aa9b149b81b_ shell: Rscript /aMeta/workflow/scripts/plot_score.R results/AUTHENTICATION...

Invalid option `--vcf'

3

I installed sequencetools 1.6.0.0 with conda (fresh env). However, when I am using pileupcaller and the --vcf option, I get an "invalid option --vcf" error and then it reports below...