CBNplot
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noriakis
Bayesian network plot for the enrichment analysis results
Hello developers and users, I am deeply intrigued by the process CBNplot employs to construct Bayesian Networks and I am particularly interested in understanding how it handles continuous data. Specifically,...
When I run the pipline until Chapter 5 Including clinical variables. I meet the problem because coudn't find the data named tcgablcaData. I will appreciate it if you can give...
Hi,Dr.noriakis, I try ro use the CBNplot with the orgDb made by myself for plant (rice), but when I entered the command as：bngeneplot(results = pwaygo,exp = gene,orgDb = osa）， but...
bngeneplot() has a default parameter：orgDb = org.Hs.eg.db. bngeneplot() don't support org.Rn.eg.db?
I tried to follow the example code with "The plot with the reference (https://noriakis.github.io/software/CBNplot/bngeneplot.html#the-plot-with-the-reference)", but with an error message "error in (function (classes, fdef, mtable) : The function 'convertIdentifiers' tag...
Hello,Dear Dr, When I run the data for non-model species following documents of CBNplot, some code cannot running successfully in Linux. ``` library(DESeq2) library(clusterProfiler) library(ggplot2) library(CBNplot) counts = read.table("rsem.merged.gene_counts_SDRE.tsv_round", header=1,...
Hi, Thanks for the tool, I have some problems while saving the image, below is my code: ``` pdf("cbn_electrontransport.pdf",width = 8,height = 6) bngeneplot(results = pwayGO,exp = cbnexp, # expSample...
Dear noriakis, I have a question about the Installation. When i try to install the CBNplot package, the following error occured: install_github("noriakis/CBNplot") Downloading GitHub repo noriakis/CBNplot@HEAD ✔ checking for file...
Dear Dr, I encountered an error. When running the example codes following documents of CBNplot3.4, some code cannot running successfully in Linux. Please help me. >dep = depmap::depmap_crispr() > bngeneplot(results...
Hi! Thanks for developing CBNplot! I just want reproduce the documentation of CBNplot, but some codes cannot running successfully in Win10. By the way, could you share the file, _tcgablcaData.rda_?...
