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Code running error

Open GenomeW opened this issue 3 years ago • 0 comments

Dear Dr, I encountered an error. When running the example codes following documents of CBNplot3.4, some code cannot running successfully in Linux. Please help me.

dep = depmap::depmap_crispr() bngeneplot(results = pway, exp = vsted, expSample = incSample, pathNum = 15, R = 10, compareRef = T, convertSymbol = T, pathDb = "reactome", compareRefType = "intersection", expRow = "ENSEMBL", sizeDep = T, dep = dep, strengthPlot = T, nStrength = 10)

'select()' returned 1:1 mapping between keys and columns 'select()' returned 1:1 mapping between keys and columns Error in checkHT(n, dx <- dim(x)) : invalid 'n' - must contain at least one non-missing element, got none. 此外: Warning messages: 1: In averaged.network.backend(strength = strength, threshold = threshold) : arc BRIP1 -> CHEK1 would introduce cycles in the graph, ignoring. 2: In averaged.network.backend(strength = strength, threshold = threshold) : arc MRE11 -> BRIP1 would introduce cycles in the graph, ignoring. 3: In cextend(av, strict = FALSE) : no consistent extension of av is possible.

GenomeW avatar Aug 23 '22 09:08 GenomeW