Nur M Shahir

Is there anyway to specific the total number of reads generated? I know how to specify by transcript but I'm more interested in overall.

Plot Aesthetics

6

Make the shiny plot aesthetics more...aesthetic

Either A) I grab a selection of diseases or B) grab the gwas catalog as a whole but I think I'll start small for proof of concept

Constraints: we need to have snps overlapped and pruned in advance. If there's a faster way of doing it that would be great but unknown.

Doable but the time it takes goes from minutes to days? So we need to have an option where the user can decide if they want to do that step...

Network of analysis of related metabolites that are in the same pathway as the metabolite of interest.

Make that an option for the user.

Give the user the option to input their own disease gwas data into the app. We need to specify the required column names

Give the user the ability to select which causal effect method to use. * Currently: ** TwoSampleMR * Future: ** MRPC (https://www.biorxiv.org/content/early/2017/08/01/171348) ** Other Causal effect methods

phase_common failing at PBWT step

4

I'm using SHAPEIT5 to phase a large panel (300K+) using phase_common and it keeps stopping at the PBWT step? This is the relevant error: > WARNING: No PBWT states found...