nmrworker

TypeError: prediction_callback() takes 4 positional arguments but 5 were given

3

## Expected Behavior Recently when we attempted to run AF2 on a complex but failed with following error message. We then test it with a notebook we ran before and...

Run Prediction halted

5

## Expected Behavior ## Current Behavior Using the latest Alphafold2.ipynb from https://github.com/sokrypton/ColabFold, I kept got this error at the beginning of "Run Prediction" stage today and the calculation was stopped:...

Can relax_amber.ipynb be modified to handle a set of uploaded pdbs?

3

## Expected Behavior generate a zipped file containing the amber relaxed structure of each uploaded pdb file ## Current Behavior only the first one is relaxed and downloaded

**What is your question?** When I submit job using google's colab online, it will generate a csv file containing the sequence. Is it possible to include such feature in localcolabalphafold?...

**What is your question?** What's the default value of all the parameters (num-recycle, num-ensemble, num-models, etc.)? And is there a way to modify them so that we don't have to...