nleguillarme

Incomplete abstract

6

While iterating on articles resulting from a PubMed query, I also noticed that the abstract is sometimes incomplete : For instance : Query : ((Haliaeetus leucocephalus[Title/Abstract])) AND ((prey[Title/Abstract]) OR (diet[Title/Abstract]))...

Articles id parsing issue

5

While iterating on articles resulting from a PubMed query, I noticed that some article ids have parsing issues. For instance : Query : ((Haliaeetus leucocephalus[Title/Abstract])) AND ((prey[Title/Abstract]) OR (diet[Title/Abstract])) Returns...

Parse PubMed Central id

3

Having a PubMed Central id field in the Article object would be great, since this PMC id can be used to retrieve the full text of the article using [this...

Any plan to add ontological reasoning to neosemantics ?

6

Hi, I would like to know if there is any plan to add more advanced reasoning capabilities (like classical reasoners such as Hermit, etc.) to neosemantics ? I heard about...

Hi. I'd like to use fast-bert to fine-tune a [BioBERT](https://github.com/dmis-lab/biobert-pytorch) model on a NER corpus. Here is the code I use to create a learner from a pretrained BioBERT model:...

Distinguish plant litter from leaf litter

4

Hi, Soil ecologists distinguish between plant litter and leaf litter, the latter being a subclass of the former : Plant litter = leaf litter+root litter+wood litter Suggestion : create a...

New synonym request : dead organic matter

1

"dead organic matter" as a synonym of "detritus"

NTR : symbiotrophically interacts with

5

RO defines the following interactions : [symbiotically interacts with](http://purl.obolibrary.org/obo/RO_0002440) and [trophically interacts with](http://purl.obolibrary.org/obo/RO_0002438). Then there is the special case of [symbiotroph](https://en.wiktionary.org/wiki/symbiotroph), or symbiotrophic organisms, which are organisms that derives nourishment...

Specifying alternative definitions for a given class

3

I would like to specify "alternative definitions" for a given class. What I call "alternative definition" is different from the "official definition" (for which I would use the [IAO:definition](http://purl.obolibrary.org/obo/IAO_0000115) annotation...

glitter for named graphs

10

Hi, I am wondering if glitter can be used to build queries 1. that specify the dataset to be used for matching using the FROM and FROM NAMED clauses 2....