Nicolas Lapalu

Improvements: short reads

1

Dear @lfaino Do you think it would be difficult to implement an option to use several bam files for short reads (many libs), instead of merging in a very huge...

Error with "origin found in reference"

5

Hi all, I get an issue on step 4. I am testing several reference sequence to assemble my fungal mitochondrion genome. For this particular reference, I get this error (below)....

Code: fix merge_wrapper.py

1

Hi, Code improvements to fix errors with merge_wrapper.py: ``` #if args.length_minimum: mergercall.append('-ml') mergercall.append(str(length_minimum)) #if args.prefix:m mergercall.append('-p') mergercall.append(str(prefix)) ``` - -ml instead of -lm - prefix (required) for quickmerge nico ;)

Problem with multigrapher

2

Hi Siegfried, I'm able to run grapher on a 2 gfa files in gfa v1.0 from Minigraph Cactus and pggb ``` pancat grapher zt_mc.full.v1.0.gfa view.html -r CHR_5 -s 100000 -e...