Nitin Ravikanthachari
Nitin Ravikanthachari
Hello, I ran braker2 using GNU Parallel with the following command. `cat /my/path/run1.txt | parallel -j+0 \ braker.pl --genome={} \ --prot_seq=/my/path/odb10_arthropoda_proteins.fa --softmasking --species {.} \ --cores=28 --workingdir=/mypathr/results/braker_annotation/{.}` Here is the...
Hello, I ran braker2 using GNU Parallel with the following command. `cat /my/path/run1.txt | parallel -j+0 \ braker.pl --genome={} \ --prot_seq=/my/path/odb10_arthropoda_proteins.fa --softmasking --species {.} \ --cores=28 --workingdir=/mypathr/results/braker_annotation/{.}` After the run...
Hello, I am trying to run Braker on multiple genomes and the test dataset and a subset of my genomes run smoothly in Braker. However, some of them stop abruptly...
Hello, I am using eggnog to functionally annotate proteins of 276 species. After using EggNog, the protein headers do not have any information about the gene. For example, this is...
Hello, I am running Orthofinder on 276 species of insects with the default settings (orthofinder.py -f /directory). This is the message I got after writing orthogroups to file: ``` 2023-01-31...
Hello, I am running swiftortho for 276 insect species. I used the following command `python run_all.py -i allprotein.fa -a 20` I started the run on Jan 30th and it's still...
Hello, I am trying to add a map to my eems plot. This is the code I ran: `library(rworldxtra)` `library(rworldmap)` `library(rgdal)` `cmcpath='/eems/runeems_snps/run1'` `plotpath='/eems/runeems_snps/run1'` `coord__long_lat