CJ Herrmann

**Is your feature request related to a problem? Please describe.** Can we provide a way to store the ZARP workflow and its results together with the metadata of the corresponding...

**Is your feature request related to a problem? Please describe.** Move function definitions from top of Snakefile to separate module **Describe the solution you'd like** Move function definitions from top...

**Is your feature request related to a problem? Please describe.** > @uniqueg : CRAM uses considerably less space and is faster for most tasks than BAM. Explore whether all tools...

**Is your feature request related to a problem? Please describe.** > @fgypas : Since snakemake has cloud execution capabilities, we can relatively easily support such environments (e.g. kubernetes). Do we...

**Is your feature request related to a problem? Please describe.** Remove PCR duplicates with a third-party tool. **Describe the solution you'd like** Suggestions from the old discussion > - https://umi-tools.readthedocs.io/en/latest/:...

**Is your feature request related to a problem? Please describe.** Currently, ZARP has only been tested with/only works with ensembl style GTF files. In order to use GTF files from...