Niko Sirmpilatze

I had the same issue with sphinx-gallery, and I've circumvented it by specifically excluding the auto-generated .py and .ipynb gallery files as sources. This forces Sphinx to render the .rst...

Probably the best place to start would be various versions of the "MNI" (Montreal Neurological Institute) templates. They come bundled with all major (f)MRI analysis software and are very widely...

WOW, ASCII art? what did you use to make this?

Thanks @talmo, this is super useful!

Thanks for the work and the comprehensive writeup @b-peri 🤗 . I'll take a look at this next week and get back to you on the specific points you raised.

Some additional thoughts on this, based on today's [meeting](https://neuroinformatics.zulipchat.com/#narrow/stream/406001-Movement/topic/Meeting.20Minutes/near/434390946): - Let's go with the window units being in time (seconds) for now, for consistency. I'll try to solicit feedback from...

[Primer](https://ml-gis-service.com/index.php/2022/04/27/data-science-moving-average-or-moving-median-for-data-filtering-time-series/) on mean/median filtering for timeseries data.

In `xarray`, this could be as simple as doing: ```python da.rolling(time=5).median() ``` See [rolling-window-operations](https://docs.xarray.dev/en/stable/user-guide/computation.html#rolling-window-operations). If we want to be fancy, we can set the timepoints below a specified confidence threshold...

Also check out [Python implementation of MotionMapper](https://github.com/bermanlabemory/motionmapperpy).

> BTW fastplotlib works in jupyter, but the exact same code can also run as a desktop app (this finally behaves properly after https://github.com/fastplotlib/fastplotlib/pull/431 ). Thanks @kushalkolar ! In light...