John Wesley

questions about Modules

2

dear developer, i have a problem when using snakemake . can Modules isolated from main workflow?? i have module with some rules output same as main workflow. subworkflow can work,...

singularity not cleanup crypt when signal terminated

1

### Version of Apptainer What version of Apptainer (or Singularity) are you using? Run singularity-ce version 3.10.1 ### Expected behavior when singularity child process was killed by sigterm, should cleanup...

I recently found that Bowtie2 and STAR seem to cat different files in this place? Is this intentional or a bug? This `gene-gene-star_final.psl` not used as it in Bowtie2 workflow...

[BUG] Expectation Maximization (EM) estimator fails with an IndexError

4

**Describe the bug** The Expectation Maximization (EM) estimator fails with an `IndexError` when the dataset contains missing values represented by `numpy.nan`, despite the documentation explicitly stating that "If some values...