Nils Giordano

Any workaround?

> The main breaking change from 3.x to 4.x is that collapsible notebook headers is disabled by default. So users wanting to allow collapsible notebook headers going forward need to...

I synced the fork with the current version of Tibanna as it was getting quite old. Still no conflict with base branch as it simply adds a sorting step before...

I think this is related: I encountered the same issue with `--tibanna`. The file provided through `--configfile` is not uploaded as a workflow file, resulting in: ```shell […] ## Downloading...

Problem is still present in 7.32.3. It’s also present in the [example report](https://snakemake.github.io/resources/report.html) that is linked in Snakemake Documentation. Does anyone have a workaround for this? (a custom CSS for...

I looked a little into it, apparently the code is working as expected because the X coordinates of each node are hard-coded and always set to "10" in the vega...

Or maybe we could recover this deleted code from version 7.1.1 that generates the x/y coordinates of the DAG layout and inject them into the vega template: https://github.com/snakemake/snakemake/blob/5355f5aae5e34ce94fbb16b552efa58526ae5370/snakemake/report/__init__.py#L562-L594 This creates...

I submitted a PR that fixes the layout. It adds back pygraphviz dependency though (as before version 7.2.0). https://github.com/snakemake/snakemake/pull/2419 

@kylelundstedt Was this really completed? Which solution has been chosen?

Related to https://github.com/bwlewis/irlba/issues/70?