Nils Gehlenborg

set membership columns with only 0s are not treated as sets

5

``` Identifier,FS30,FS60,FS120,FS180,FS360,BSLPM 5_8S_rRNA,0,0,0,0,0,1 7SK,0,1,1,1,1,0 AABR07004894.1,0,0,0,1,0,0 AABR07015081.2,0,0,1,0,0,0 ``` In the above example, the first column ("FS30") contains only 0s. Trying to create an `upset` plot on this matrix will only contain...

support for ggplot themes

7

http://docs.ggplot2.org/0.9.2.1/theme.html Some discussion about which parts of the plot should not be affected by themes will be required.

The spinning indicators give the impression that data is loading but that is not correct. An alternative that is not moving would be better.

Support additional color maps

5

I believe the library that we are using for color maps supports more than we have implemented at the moment. We should consider adding the full set.

add image info view to Avivator

1

Show OME metadata, e.g. like this:

Good overview of the process: https://stackoverflow.com/a/58927878

Low-resolution views often look very pixelated on my display (DELL U2720Q Display, 27-inch (3840 x 2160) -- but the same is happening on my laptop display, which is a 13.3-inch...

explore if it is possible to extend loaders so that images from different sources can be mapped to the same layer

1

E.g. in cases when multiple TIFFs should be additively blended. The major advantage would be more flexibility for how people store their data.