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Results 97 comments of nf-core bot

Important! Template update for nf-core/tools v2.5

Version `2.5.1` of the [nf-core/tools](https://github.com/nf-core/tools) pipeline template has just been released. This pull-request is now outdated and has been closed in favour of https://github.com/nf-core/fetchngs/pull/113 Please use https://github.com/nf-core/fetchngs/pull/113 to merge in...

Important! Template update for nf-core/tools v2.5

Version `2.5.1` of the [nf-core/tools](https://github.com/nf-core/tools) pipeline template has just been released. This pull-request is now outdated and has been closed in favour of https://github.com/nf-core/rnafusion/pull/275 Please use https://github.com/nf-core/rnafusion/pull/275 to merge in...

Important! Template update for nf-core/tools v2.5

Version `2.5.1` of the [nf-core/tools](https://github.com/nf-core/tools) pipeline template has just been released. This pull-request is now outdated and has been closed in favour of https://github.com/nf-core/ampliseq/pull/473 Please use https://github.com/nf-core/ampliseq/pull/473 to merge in...

Move fastp arguments to modules.config

> [!WARNING] > Newer version of the nf-core template is available. > > Your pipeline is using an old version of the nf-core template: 3.0.2. > Please update your pipeline...

Draft: Add feature for sample demultiplexing followed by immune profiling

> [!WARNING] > Newer version of the nf-core template is available. > > Your pipeline is using an old version of the nf-core template: 2.14.1. > Please update your pipeline...

include MiXCR toolkit in nf-core/airrflow

> [!WARNING] > Newer version of the nf-core template is available. > > Your pipeline is using an old version of the nf-core template: 3.0.2. > Please update your pipeline...

Support for PureCN

> [!WARNING] > Newer version of the nf-core template is available. > > Your pipeline is using an old version of the nf-core template: 3.0.2. > Please update your pipeline...

Upgrade simpleaf and alevinqc

> [!WARNING] > Newer version of the nf-core template is available. > > Your pipeline is using an old version of the nf-core template: 3.1.1. > Please update your pipeline...

Addition of bbsplit for filtering of genomic contaminants

> [!WARNING] > Newer version of the nf-core template is available. > > Your pipeline is using an old version of the nf-core template: 3.0.2. > Please update your pipeline...

Use --bga when creating bigWigs

> [!WARNING] > Newer version of the nf-core template is available. > > Your pipeline is using an old version of the nf-core template: 3.2.1. > Please update your pipeline...