newpest

I get the error when I run Circle-Map ReadExtractor： ``` Process SyncManager-1: Traceback (most recent call last): File "/usr/local/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap self.run() File "/usr/local/lib/python3.8/multiprocessing/process.py", line 108, in run...

Circle-Map:v1.1.4 -bam2bam.py uses multiprocessing.Manger().Queue() for process communication, but it results in an error: [AF_UNIX path too long](https://github.com/iprada/Circle-Map/issues/103#top)

I found that when the number of records in the bed file exceeds 16000000, the running time will become very slow, and when it is less than 16000000, it will...

my directories: params annotations: entrypoints gcWinds mapability output: reads: chr1.bed

In my working directory, I can successfully read the parameter file： ``` > getwd() [1] "/readDepth" > read.table("params") V1 V2 1 readLength 100 2 fdr 0.05 3 overDispersion 1 4...

The seeds generated by CNV detection by Cnvkit seem to have higher resolution than the seeds obtained by readDepth Seeds by ReadDepth: ``` 8 130540901 131268201 5.796678958040257 8 132769401 133678001...

Hi Jens, I have a small question. We found that the Amplicons obtained when using different Caller seeds as input will be very different. For example, when using ReadDepth and...