Michael
Michael
Hi @pvelasco, @yarikoptic, i'm joining the conversation as I'm facing a related issue. I'd like to use and contribute to `reproin` to help have standardized sequence names across scanners when...
For example when `intendedFor` misses a run due to slight differences in Shimming and Image Geometry, here is an example for a `func` sequence with 3 runs. Run 2 is...
@yarikoptic i'll start working on the PR with the `` and `` tags as mentioned in the suggestion in the [comment above](https://github.com/nipy/heudiconv/issues/554#issuecomment-1209470200) except if you think that's not a good...
Hi @yarikoptic , yes in the process of testing the `fid` and `afid`. I understand the worry about BIDS compatibility. Maybe we could have a list of heudiconv reserved keywords...
@yarikoptic I am currently relooking at #503 and implementing it as described there in reproin (ordered list of processing steps separated by "x" as discussed). Should i keep something else...
@yarikoptic thank you for the feedback, i was posting mostly in case this was something known (with a known solution), but indeed it'd be great to find out what is...
And here the output of the verbose debug ```console DEBUG: Starting the abomination DEBUG: Starting new HTTPS connection (1): rig.mit.edu:443 WARNING: Could not check for version updates: Connection to server...
And here the output of py-spy to where it is stalled (gzip write) ```console Process 1098440: python /mnt/projects/bids/code/test_heudiconv_hang.py Python v3.9.13 (/home/michael/.conda/envs/reproin39dev/bin/python3.9) Thread 1098440 (active): "MainThread" write (gzip.py:288) Arguments: self: data:...
Just to emphasize that after the ~15 mins hang then it continues fine (conversion, gzip, etc. of other sequences do not have the 13-min delay). The verbose output posted [above](https://github.com/nipy/heudiconv/issues/584#issuecomment-1209009533)...
Hi @satra, both trials are on my local linux tower. I got the same hang either running heudiconv in Docker or running it from a local conda environment. It is...