Nicolas Damond

icon indicating an email [email protected]

icon company University of Zurich and ETH Zurich icon location Zurich, Switzerland icon location Computational biologist with expertise in single cell data and image analysis.

Results 4 comments of Nicolas Damond

cbind when subsetting spots from samples

Thanks @lmweber, I have exactly the same issue and the new `sample_id` entries generated by `cbind` also prevent using downstream functions: ``` aggregateAcrossCells(spe, ids = spe$patient_id, statistics = "mean") Error...

Segmentation issues

Hi @KHALILISAEED, As @jwindhager mentioned, the jupyter scripts are not finalized yet. The standard way to use `steinbock` is currently to use docker: https://bodenmillergroup.github.io/steinbock/latest/install-docker/ If you still want to use...

Examples

Hi Jonas, thanks for looking into this. Following up on our offline discussion, here is a quick update on the points you raised above https://github.com/BodenmillerGroup/steinbock/pull/135#issuecomment-1220583844. 1. The download script is...

Examples

Hi Jonas, thanks for the updates, here is a summary of the last modifications : '1. I included the newly exposed functions (https://github.com/BodenmillerGroup/steinbock/pull/135/commits/f5603981d6cbcce48c77be70248f9f7fcca4ccab, https://github.com/BodenmillerGroup/steinbock/pull/135/commits/4597e16460271eb0c7576b7ff889565acb077b73, https://github.com/BodenmillerGroup/steinbock/pull/135/commits/bb818a8d678c7c6a17f00bde6580cac0e90fa59e) and removed the `helpers.py` file...