Nick Coish

The `translate` method on NucleotideSequence is very useful when you have an unambiguous sequence, but if the sequence contains symbols from the extended ambiguous alphabet, calling the `translate` method results...

Feature Request: Residue Depth MSMS application integration

3

BioPython supports using the MSMS tool to find residue depth from the solvent accessible surface. It would be great if Biotite could support this as well, possibly through an extension...

Update to use the v2 API as v1 has been fully discontinued

6

As of today (2022-07-13), the v1 version of the RCSB search API has been fully discontinued. This PR swaps the library to use the v2 version of the API, following...

Minimization sometimes does not terminate

5

Frequently when running `relax_hydrogen` in my project, if I do not set `iterations`, the function seems to get stuck for particular `angle_increment` values. Ideally I want my program to run...