Nic Bollis

I added the nuget package to my solution and am trying to load in data files. Following along with the MS Data Files examples in the readme, I cannot seem...

[Ignore Coverage] #4 - Digestion params generalization

2

Generalizes digestion parameters in common parameters to enable rna digestion and protein digestion. In the task windows, I had to move all things dependent upon the digestion agent being a...

If the update spectral library option is checked, but no library is present, the search will continue as usual, but throw an exception when trying to update the library. This...

Fragger Result reading

1

Added classes to readers for MsFragger Psm, Protein, and Peptide reading. The protein and peptide files have two possible formats. One for the individual file result and one for the...

Allow SSRCalc to be called from just base sequence without constructing PeptideWithSetModifications

Added support for crux output

1

Added support for reading and writing a .txt output from crux and Shortreed's request.

MsPathFinderT result reading

2

Added support for MsPathFinderT result parsing. Added the three types of result files from MsPathFinderT in one ResultFile Class. This PR includes changes from adding in fragger results and will...

MetaDraw Fragmentation Reanalysis

2

Enables the reanalysis of a fragmentation spectrum with additional fragment ion types. The plotting methods use the MatchedIons of the psm that gets passed in to determine what to plot....

Meta Draw Quality of Life Updates

1

Added additional customization options to the meta draw spectral match plot. MetaDrawSettings is now more robust to prevent crashes due to saved parameter reading/writing. Meta Draw settings window was reorganized...