GeneLab_Data_Processing

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- Added Nextflow license to Metagenomics 3rd-party licenses

jihanyehia

Error while setting up NF_MGIllumina_1.0.0

1

Hi. I have been using the SW_MGIllumina_2.0.3 for a long time now. I thought of updating to the NF_MGIllumina_1.0.0 also because I want to be able to use the parameter...

ankurnaqib

* Updated Amplicon Seq pipeline doc - add zipped files and zip steps - rarefaction_depth.txt files - assay_suffix added throughout - sync alpha/beta diversity code - failure file notes -...

bnovak32

- Regularize indentation/spacing in code blocks - Add note at top about tech_type and assay suffixes.

bnovak32

[bulkRNASeq] NF_RCP 2.0.0 - post-processing fails after with user-provided runsheet_path

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**Describe the bug** Post-processing workflow fails on run folder created by main workflow that was started with a run sheet rather than an accession number. **To Reproduce** Steps to reproduce...

bnovak32

[bulkRNASeq] NF_RCP 2.0.0 - Custom genomes are limited to organisms found in reference_table

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**Describe the bug** Custom genome support is limited to organisms found in the pre-defined `reference_table` **To Reproduce** Steps to reproduce the behavior: 1. Run the NF_RCP 2.0.0 main workflow on...

bnovak32